PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00160g00722.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 386aa    MW: 43661.6 Da    PI: 7.2483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00160g00722.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l+ +++q+G+  +W + ++++g++R++k+c++rw++yl
  Peaxi162Scf00160g00722.1 14 KGPWSPEEDAKLKAYIEQHGTCgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                              79*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.275966IPR017930Myb domain
SuperFamilySSF466895.26E-191198IPR009057Homeodomain-like
SMARTSM007173.0E-131364IPR001005SANT/Myb domain
PfamPF002493.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-251569IPR009057Homeodomain-like
CDDcd001671.09E-91662No hitNo description
PROSITE profilePS500904.676399IPR017877Myb-like domain
SMARTSM007171.467104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-1070106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRAPCCDKN SVKKGPWSPE EDAKLKAYIE QHGTCGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIL SLYISIGSRT DNDIKNYWNT KLKKKLFGKQ RKNLKGNNQK  120
QGSRKGREMS SSMSMVSNEN IIANPSWPEL PILQPIPYSN EEPRFNDHSS IRKLLMKLGG  180
KFSDDDNDDE KPMNEPPSNP QYPMDNSLIQ PIYDQDCINM MHSPFTNNTH YNMDAKALCW  240
ADTDTERRKL GERMGSDTPV VPTVNDGCNF INELEHMMYT NPQKLSGLEM LYVDMLNNKH  300
ATTLGGSLDL EDMNNLVFPL PPLDASNTEG HQHGTLLQGG ALNELRLQAM SHPPCVWLQQ  360
PGKGWLSEAI MIRESRVEGL SLNGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-16141067108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2445572e-35AF244557.1 Magnolia x soulangeana 16S ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product.
GenBankDQ6294592e-35DQ629459.1 Tasmannia insipida small subunit ribosomal RNA gene, partial sequence; chloroplast.
GenBankDQ6295882e-35DQ629588.1 Myristica yunnanensis small subunit ribosomal RNA gene, partial sequence; chloroplast.
GenBankDQ8876762e-35DQ887676.1 Drimys granadensis chloroplast, complete genome.
GenBankDQ8999472e-35DQ899947.1 Liriodendron tulipifera chloroplast, complete genome.
GenBankEF3803522e-35EF380352.1 Chloranthus spicatus chloroplast, complete genome.
GenBankEF3803542e-35EF380354.1 Illicium oligandrum chloroplast, complete genome.
GenBankEU1615332e-35EU161533.1 Illicium verum small subunit ribosomal RNA gene, partial sequence; chloroplast.
GenBankHM7753822e-35HM775382.1 Magnolia kwangsiensis chloroplast, complete genome.
GenBankHQ6646272e-35HQ664627.1 Tasmannia lanceolata ribosomal protein L2 (rpl2) gene, exons 1, 2 and partial cds; ribosomal protein L23 (rpl23) gene, complete cds; tRNA-Ile (trnI-CAU) gene, complete sequence; hypothetical chloroplast RF2 (ycf2) gene, complete cds; tRNA-Leu (trnL-CAA) gene, complete sequence; NADH-plastoquinone oxidoreductase subunit 2 (ndhB) and ribosomal protein S7 (rps7) genes, complete cds; ribosomal protein S12 (rps12) gene, exons 2, 3 and partial cds; tRNA-Val (trnV-GAC), 16S ribosomal RNA (rrn16), tRNA-Ile (trnI-GAU), tRNA-Ala (trnA-UGC), 23S ribosomal RNA (rrn23), 4.5S ribosomal RNA (rrn4.5), 5S ribosomal RNA (rrn5), tRNA-Arg (trnR-ACG), and tRNA-Asn (trnN-GUU) genes, complete sequence; and hypothetical chloroplast RF1 (ycf1) gene, partial cds; plastid.
GenBankHQ6646332e-35HQ664633.1 Sarcandra chloranthoides ribosomal protein L2 (rpl2) gene, exons 1, 2 and partial cds; ribosomal protein L23 (rpl23) gene, complete cds; tRNA-Ile (trnI-CAU) gene, complete sequence; hypothetical chloroplast RF2 (ycf2) gene, complete cds; tRNA-Leu (trnL-CAA) gene, complete sequence; NADH-plastoquinone oxidoreductase subunit 2 (ndhB) and ribosomal protein S7 (rps7) genes, complete cds; ribosomal protein S12 (rps12) gene, exons 2, 3 and partial cds; and tRNA-Val (trnV-GAC), 16S ribosomal RNA (rrn16), tRNA-Ile (trnI-GAU), tRNA-Ala (trnA-UGC), 23S ribosomal RNA (rrn23), 4.5S ribosomal RNA (rrn4.5), 5S ribosomal RNA (rrn5), tRNA-Arg (trnR-ACG), and tRNA-Asn (trnN-GUU) genes, complete sequence; plastid.
GenBankJN2277402e-35JN227740.1 Magnolia denudata isolate BJ006 chloroplast, complete genome.
GenBankJN8675762e-35JN867576.1 UNVERIFIED: Magnolia liliiflora chloroplast, complete genome.
GenBankJN8675772e-35JN867577.1 Magnolia denudata voucher BJ007 chloroplast, complete genome.
GenBankJN8675792e-35JN867579.1 Magnolia officinalis chloroplast, complete genome.
GenBankJN8675802e-35JN867580.1 Magnolia officinalis subsp. biloba voucher SC001 chloroplast, complete genome.
GenBankJN8675812e-35JN867581.1 Magnolia officinalis subsp. biloba voucher SC002 chloroplast, complete genome.
GenBankJN8675822e-35JN867582.1 Magnolia officinalis subsp. biloba voucher SNJ044 chloroplast, complete genome.
GenBankJN8675842e-35JN867584.1 Magnolia grandiflora voucher NJ016 chloroplast, complete genome.
GenBankJN8675872e-35JN867587.1 Magnolia grandiflora voucher NJ018 chloroplast, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785472.10.0PREDICTED: transcription factor RAX1-like
SwissprotQ9M2Y91e-65RAX3_ARATH; Transcription factor RAX3
TrEMBLM1A1M31e-118M1A1M3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000127021e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-59myb domain protein 36